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cytoscape / cy-ndex-2

A Cytoscape client app for the NDEx database
MIT License
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CyNDEx fails to load browser in Ubuntu 18.04 #48

Closed dotasek closed 8 months ago

dotasek commented 5 years ago

When first clicking on 'Export Collection to NDEx' from the collections context menu, CyNDEx2 attempts to download libraries and fails with the following exception:

05:08:50 SEVERE: There are next missing dependencies: browsercore64 => libgconf-2.so.4 libbrowsercore64.so => libgconf-2.so.4 05:08:50 SEVERE: Failed to start IPC process. java.lang.IllegalStateException: Missing dependendecies have been detected. Check the log for details. at com.teamdev.jxbrowser.chromium.internal.ipc.ExternalChromiumProcessLinux.preProcessRun(SourceFile:3162) at com.teamdev.jxbrowser.chromium.internal.ipc.ExternalChromiumProcess.doStart(SourceFile:62) at com.teamdev.jxbrowser.chromium.internal.ipc.ChromiumProcess.start(SourceFile:235) at com.teamdev.jxbrowser.chromium.internal.ipc.d.run(SourceFile:196) at java.lang.Thread.run(Thread.java:748) com.teamdev.jxbrowser.chromium.internal.ipc.IPCException: Failed to start IPC process. at com.teamdev.jxbrowser.chromium.internal.ipc.d.run(SourceFile:203) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.IllegalStateException: Missing dependendecies have been detected. Check the log for details. at com.teamdev.jxbrowser.chromium.internal.ipc.ExternalChromiumProcessLinux.preProcessRun(SourceFile:3162) at com.teamdev.jxbrowser.chromium.internal.ipc.ExternalChromiumProcess.doStart(SourceFile:62) at com.teamdev.jxbrowser.chromium.internal.ipc.ChromiumProcess.start(SourceFile:235) at com.teamdev.jxbrowser.chromium.internal.ipc.d.run(SourceFile:196) ... 1 more 17:08:50.963 ERROR [Thread-40] Failed to create browser instance for CyNDEx-2. Restart Cytoscape and try again. Error: Failed to start IPC process.

coleslaw481 commented 8 months ago

newer versions of cy-ndex no longer use jxbrowser. closing