Input files for the Advanced Cancer Networks and Data notebooks (Step 3):
In the R version we load files from the extdata dir that comes packaged with RCy3. This also works when the notebook is run on JupyterHub (no sandbox required).
In the Python version we load files from some “data” dir (chunk #33). This Is A Problem! We expect users to download files (from where?) and manually place them in a data dir relative to where they are running this ipynb. We should change this to either:
Provide the file in the py4cy package (like in RCy3), or
Have the notebook download the files and read them from a relative notebook dir (e.g., ‘./brc.exp.tsv’)
Input files for the Advanced Cancer Networks and Data notebooks (Step 3):