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cytoscape / cytoscape-manual

Markdown version of Cytoscape manual

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issues

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ClusteringCoefficient vs ClosenessCentrality

#73 marina-vn closed 3 months ago
1
The Quick Tour link in page 2 seems to not exist anymore

#72 ooker777 closed 6 months ago
1
3.10.2 updates

#71 khanspers closed 6 months ago
0
Fix broken version selector in ReadTheDocs

#70 khanspers closed 10 months ago
3
necessary changes for updating latest manual

#69 khanspers closed 1 year ago
0
Need to migrate config to yaml by Sept

#68 AlexanderPico closed 1 year ago
7
font size of cytoscape 3.10 in ubuntu 23.04

#67 shamshad-ather closed 1 year ago
2
updated to manual for 3.10.0

#66 khanspers closed 1 year ago
0
Confirm core apps / core before 3.10 release

#65 khanspers closed 1 year ago
1
Describe updates to search functionality

#64 khanspers closed 1 year ago
1
Updates to screenshots for 3.10

#63 khanspers closed 1 year ago
3
Add documentation for new core apps

#62 khanspers closed 1 year ago
5
Describe updates to zoom and new lasso selection (3.10)

#61 khanspers closed 1 year ago
1
Describe edge label rotation (3.10)

#60 khanspers closed 1 year ago
1
Add sentence describing that Table styles are saved (as of 3.10)

#59 khanspers closed 1 year ago
0
Review which functions are described, possibly add more (for example SPLIT)

#58 khanspers closed 1 year ago
2
Add better description of Network Table

#57 khanspers closed 1 year ago
0
latest changes for 3.9.1 release

#56 khanspers closed 2 years ago
0
Minor update to test pull request

#55 khanspers closed 2 years ago
0
Add link to Chinese manual on landing page

#54 khanspers closed 1 year ago
0
Chinese Version Cytoscape User Manual

#53 leovan closed 2 years ago
8
Update py4cytoscape

#52 AlexanderPico closed 1 year ago
1
Exporting Error: This network contains null or empty node name

#51 sakura7621 closed 3 years ago
1
how to prevent edge reshaping upon zoom?

#50 manihamidi closed 4 years ago
3
Update Export_Your_Data.md

#49 rpillich closed 4 years ago
0
Manually creating directed edges

#48 bramson closed 4 years ago
1
Degree Filters - definition needed

#47 Althalis closed 4 years ago
1
Broken link for Graph Markup Language (GML) specification

#46 peterjc closed 5 years ago
2
Broken link for XGMML specification

#45 peterjc closed 4 years ago
4
Fix broken link on "Creating Networks" page

#44 peterjc closed 5 years ago
1
RCy3 on Cytoscape Automation Page

#43 cannin closed 4 years ago
1
Link to perfuse.org is dead

#42 ghost closed 5 years ago
1
All of the .md hyperlinks are broken

#41 hydrosquall closed 5 years ago
4
importing edge direction

#40 dave7777 closed 4 years ago
0
Updating panel screenshots

#39 pietmolenaar closed 5 years ago
1
Update Navigation_and_Layout.md

#38 pietmolenaar closed 5 years ago
0
Add instructions on Docker

#37 dotasek closed 4 years ago
1
Rudi's Edits - importing from NDEx

#36 rpillich closed 6 years ago
0
Rudi's edits - Nov 13, 2017

#35 rpillich closed 6 years ago
0
Update Programmatic_Access_to_Cytoscape_Features_Scripting.md

#34 dotasek closed 5 years ago
1
Create LICENSE

#33 AlexanderPico closed 7 years ago
0
Fixed links in the GPU docs

#32 martinmodrak closed 7 years ago
0
Basic documentation for OpenCL and GPU

#31 martinmodrak closed 7 years ago
1
Basic documentation for OpenCL and GPU

#30 martinmodrak closed 7 years ago
0
updates screenshots for Preferences section

#29 khanspers closed 8 years ago
0
fixes typo and adds text to Create Subnetworks section

#28 khanspers closed 8 years ago
0
Find out why PDF version doesn't have tables

#27 bdemchak closed 4 years ago
0
Chapter 3: Include http://wiki.cytoscape.org/Data_Sets text in a text section, then link to it

#26 bdemchak closed 8 years ago
0
Chapter 24: Change Powershell reference to Cytoscape 3 Interactive Shell and include that text in this chapter

#25 bdemchak closed 8 years ago
0
Chapter 23: Change compatibility charts to link to master versions found in app store page

#24 bdemchak closed 8 years ago
0