Closed khanspers closed 11 months ago
should we switch to csv?
Good idea, we can switch to csv also.
The relevant slide has been updated: https://cytoscape.org/cytoscape-tutorials/protocols/rna-seq-data-analysis/#/background
The file is only available as tsv from Expression Atlas, so if we wanted to switch to csv we need to change how the file is retrieved and host a local csv copy. Not a problem but Im not sure if it makes a difference really.
Currently the tutorial says to just open tsv in Excel. Because of the issues with Excel interpreting some gene names as dates and changing them. Instead the tutorial should instruct users to launch Excel, open blank doc, then go to Data > Get External Data and import the tsv. During import, the Gene Name column type should be switched to "text" instead of "general".