Closed AlexanderPico closed 1 month ago
Upload to this folder: cytoscape-tutorials/protocols/rna-seq-data-analysis/
And after the tutorial site is rebuilt it should be accessible from this link: https://cytoscape.org/cytoscape-tutorials/protocols/rna-seq-data-analysis/rna-seq-data-cytoscape.csv
So the STRING query would include all genes in the new input file, up and down, correct? The resulting network would look something like this:
I know we've gone back and forth on this, but currently the intro experience with the public dataset is very bad for this tutorial: https://cytoscape.org/cytoscape-tutorials/protocols/rna-seq-data-analysis/#/
Attached is a simplified version of the dataset that they won't have to tweak at all in Excel. It's pre-filtered for significant up and down genes and the columns are relabeled.
Otherwise the tutorial steps can be the same, but this will give a red-blue divergent gradient and more interesting experience.
rna-seq-data-cytoscape.csv