Even better, we should extract out this simple, most common use case on it's own:
query STRING by gene name (based on example dataset)
load data (mapping via "query term" column)
style network
comment on largest connected subnetwork
This should be separated from the disease query use case. So, maybe just split the current tutorial into two: diff exp network viz and disease network viz.
Actually, example 1 in Diff Exp tutorial is exactly this. With the slight difference that we are using identifiers instead of gene names, and we include both up- and down-regulated as separate examples.
Even better, we should extract out this simple, most common use case on it's own:
This should be separated from the disease query use case. So, maybe just split the current tutorial into two: diff exp network viz and disease network viz.
Originally posted by @AlexanderPico in https://github.com/cytoscape/cytoscape-tutorials/issues/50#issuecomment-720135694