search

cytoscape / diffusion

A Cytoscape app to interface with the heat diffusion service
3 stars 5 forks source link

Diffusion state retained across Cytoscape sessions #18

Closed bdemchak closed 7 years ago

bdemchak commented 7 years ago

Verify that the state of the Diffusion is saved in the Cytoscape session file and is restored when the session file is reloaded.

bdemchak commented 7 years ago

State is not maintained in saved session file. Start with galFiltered and diffuse a number of nodes. Try selecting Range Columns = diffusion_output_heat, Subnetwork Creator = size_rank, Heat Threshold = 100. Then save the session to a file, close Cytoscape, restart it and open the session file. The settings are not remembered.

keiono commented 7 years ago

This requires new spec for the UI saving mechanism and it is not straight forward.

bdemchak commented 7 years ago

Feature not required.