User-friendly notebook for visualizing PTM data on pathways and networks that can run in Colab.
User selects a dataset (from preprocessed content in datasets folder)
User chooses some options (like only PTMs with known upstream enzyme present and display as Ser455, etc)
User chooses one or more pathways or networks (i.e., WPIDs, PFOCR IDs, NDEx IDs)
Notebook generates data visualization and tabular data mappings
To run on arbitrary user datasets, the user would clone the repo, add their data to datasets, run preprocessing script, and then run the notebook. Or they can fork the repo, upload their data to datasets, trigger GH Actions for preproccessing, and then run the notebook in Colab.
User-friendly notebook for visualizing PTM data on pathways and networks that can run in Colab.
datasetsfolder)only PTMs with known upstream enzyme presentanddisplay as Ser455, etc)To run on arbitrary user datasets, the user would clone the repo, add their data to
datasets, run preprocessing script, and then run the notebook. Or they can fork the repo, upload their data todatasets, trigger GH Actions for preproccessing, and then run the notebook in Colab.We can make the Python version later.