Open SeekPoint opened 5 years ago
please try updating to python 3.6.
C:\ub16_prj\py2cytoscape\examples>python samples_for_v0.6.0.py To avoid name collision with the igraph project, this visualization library has been renamed to 'jgraph'. Please upgrade when convenient. py2cytoscape: Error importing igraph. You won't be able to import from igraph.
Do you have the Cytoscape desktop program running? What version are you using?
Apart from making sure you have Cytoscape running it might be that the jump to python 3.7 was a bit too much. I would follow @zachary822 recommendation and try it on 3.6.
Why don't you just write a simple example about how to use py2cytoscape? I can not learn any useful getting started about your README.md
It seems to me the py2cytoscape project is deprecated and you should have a look at py4cytoscape https://github.com/cytoscape/py4cytoscape With documentation here: https://py4cytoscape.readthedocs.io/en/latest/ and examples here: https://py4cytoscape.readthedocs.io/en/latest/tutorials/index.html
Hi ...
With apologies... py2cytoscape has been deprecated. We will put a notice on this report.
In the meantime, would you mind trying py4cytoscape??
https://pypi.org/project/py4cytoscape/
https://github.com/cytoscape/py4cytoscape
... sent from my mobile phone ... please forgive my typos.
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On Thu, Feb 17, 2022, 4:54 AM GlennCGL @.***> wrote:
Why don't you just write a simple example about how to use py2cytoscape? I can not learn any useful getting started about your README.md
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Thanks, Matthias … I have added a deprecation message and forwarding link to the py2cytoscape README page.
ub16hp@UB16HP:/media/ub16hp/WINDOWS/ub16_prj/py2cytoscape/examples$ python3 samples_for_v0.6.0.py