Open kozo2 opened 5 years ago
cyclient.session.open(session_url= does not work.
cyclient.session.open(session_url=
Cytoscape: 3.7.1
CyRest: 3.8.0
Java:
java -version openjdk version "1.8.0_222" OpenJDK Runtime Environment Corretto-8.222.10.1 (build 1.8.0_222-b10) OpenJDK 64-Bit Server VM Corretto-8.222.10.1 (build 25.222-b10, mixed mode)
Code:
from py2cytoscape import cyrest cytoscape=cyrest.cyclient() cytoscape.session.open(session_url="http://nrnb.org/data/BasicDataVizDemo.cys")
error:
<Response [500]> 500 b'{\n "data": {},\n "errors":[{"status":500,"type":"urn:cytoscape:ci:cyrest-core:v1:handle-json-command:errors:2","message":"Mark/Reset not supported.","link":"file:/Users/knishida/CytoscapeConfiguration/3/framework-cytoscape.log"}]\n}' --------------------------------------------------------------------------- ValueError Traceback (most recent call last) <ipython-input-15-f521a220739d> in <module> 1 from py2cytoscape import cyrest 2 cytoscape=cyrest.cyclient() ----> 3 cytoscape.session.open(session_url="http://nrnb.org/data/BasicDataVizDemo.cys") ~/miniconda3/lib/python3.7/site-packages/py2cytoscape/cyrest/session.py in open(self, session_file, session_url, verbose) 34 35 PARAMS=set_param(["file", "url"],[session_file, session_url]) ---> 36 response=api(url=self.__url+"/open", PARAMS=PARAMS, verbose=verbose) 37 return response 38 ~/miniconda3/lib/python3.7/site-packages/py2cytoscape/cyrest/base.py in api(namespace, command, PARAMS, body, host, port, version, method, verbose, url, parse_params) 148 if "errors" in res.keys(): 149 if len(res["errors"]) > 0: --> 150 raise ValueError(res["errors"][0]) 151 if not verbose: 152 if "data" in res.keys(): ValueError: {'status': 500, 'type': 'urn:cytoscape:ci:cyrest-core:v1:handle-json-command:errors:2', 'message': 'Mark/Reset not supported.', 'link': 'file:/Users/knishida/CytoscapeConfiguration/3/framework-cytoscape.log'}
this does not seem to be python related as it also fails while testing in swagger
@dotasek could you check my comment just above this one, we are having troubles with session.open Thanks!
session.open
cyclient.session.open(session_url=
does not work.Cytoscape: 3.7.1
CyRest: 3.8.0
Java:
Code:
error: