cytoscape / py4cytoscape

Python library for calling Cytoscape Automation via CyREST
https://Py4Cytoscape.readthedocs.io
Other
69 stars 15 forks source link

Cookbook: Use a dataframe before calling load_table_data() #36

Open bdemchak opened 3 years ago

bdemchak commented 3 years ago

When I import a .soft-based table, I first read the .soft into a dataframe and then call py4cytsocape.load_table_data(). This works well, but requires a little surgery on the dataframe. This is such a useful pattern that it needs visibility in a cookbook. Furthermore, in several situations, I spent more than a couple of hours trying to understand which py4cytoscape function to use and what its parameters should be. A cookbook would have made this discovery economically viable.

Recommendation: A cookbook for using py4cytoscape functions.

bdemchak commented 3 years ago

py4cytoscape

bdemchak commented 3 years ago

py4cytoscape

bdemchak commented 3 years ago

Cookbook: Use a dataframe before calling load_table_data() #36

bdemchak commented 3 years ago

get_edge_info does not accept list of SUIDs of edges #36