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cytoscape
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py4cytoscape
Python library for calling Cytoscape Automation via CyREST
https://Py4Cytoscape.readthedocs.io
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Connection to Cytoscape sometimes fails
#88
bdemchak
closed
2 years ago
3
.gitignore: build and dist
#87
kozo2
closed
2 years ago
0
Allow full style definition to be fetched and created
#86
bdemchak
closed
2 years ago
1
get_edge_info throws some errors when having a large SUID list as the input
#85
kozo2
closed
2 years ago
1
Add get_network_list()
#84
bdemchak
closed
2 years ago
1
Add delete_all_visual_styles()
#83
bdemchak
closed
2 years ago
1
Move all ipynbs in this repo to `cytoscape-automation` repo
#82
kozo2
closed
2 years ago
0
Graphics details upon export
#81
nilsoberg
opened
2 years ago
14
faster select_all_* functions
#80
AlexanderPico
closed
2 years ago
1
Nodes size specification error
#79
IlonaGA
closed
2 years ago
5
p4c.layout_network() ++
#78
eirinland
closed
2 years ago
15
problem with p4c.set_node_boarder...
#77
eirinland
closed
2 years ago
2
open_app_store function opens the Cytoscape App Store 404 web page
#76
yihangx
closed
2 years ago
1
Create AnnotationShape functions per RCy3
#75
bdemchak
closed
2 years ago
1
Verify that substantial remote workflow executes simultaneously for multiple users
#74
bdemchak
closed
2 years ago
3
Need option to allow local Jupyter to use local paths directly
#73
bdemchak
closed
2 years ago
1
Added ability to create a network view.
#72
nilsoberg2
closed
2 years ago
13
import_network_from_file fails on some XGMML
#71
nilsoberg2
closed
2 years ago
3
import_network_from_file() fails if file name contains space followed by equal symbol
#70
coleslaw481
opened
2 years ago
1
get_network_list() fails in local notebook
#69
kozo2
closed
2 years ago
3
Update MCODE notebook
#68
kozo2
closed
2 years ago
0
get_installed_apps() fails
#67
kozo2
closed
2 years ago
1
Delete the part that was not merged well
#66
kozo2
closed
3 years ago
0
0.0.10
#65
bdemchak
closed
3 years ago
1
Just add guide for "FileTransfer App installation"
#64
kozo2
closed
3 years ago
0
Add Cancer-networks-and-data to tutorial
#63
kozo2
closed
3 years ago
0
Reverse color palettes?
#62
AlexanderPico
closed
3 years ago
10
Add analyze_coexp_with_mcode.ipynb to the tutorial
#61
kozo2
closed
3 years ago
0
Add Identifier mapping tutorial
#60
kozo2
closed
3 years ago
0
Update tutorials for 0.0.10
#59
kozo2
closed
3 years ago
0
Update tutorial notebooks
#58
kozo2
closed
3 years ago
0
Text overlap inside node
#57
rafael-diaz7
closed
3 years ago
10
`apply_filter` fails with "TypeError: object of type 'NoneType' has no len()"
#56
kozo2
closed
3 years ago
3
Add image to Importing-data.ipynb
#55
kozo2
closed
3 years ago
0
py4cytoscape very slow to tranfert a network between a notebook and cytoscape.
#54
pkrezel
closed
2 years ago
8
Use the value generators for the tutorial.
#53
kozo2
closed
3 years ago
0
In cyrest_put(): Could not parse the input JSON for updating view because: HTTP 404 Not Found
#52
StefanR-github
closed
3 years ago
5
Make RTD available even before the PyPI release
#51
kozo2
closed
3 years ago
0
Add sphinx to setup.py
#50
kozo2
closed
3 years ago
2
create_network_from_networkx only takes in a MultiDiGraph
#49
Jiafi
closed
3 years ago
2
Add Cytoscape-and-iGraph.ipynb+rst to doc
#48
kozo2
closed
3 years ago
0
Remove !wget and use sandbox_url_to
#47
kozo2
closed
3 years ago
0
Add Importing-data to the tutorial
#46
kozo2
closed
3 years ago
0
create_network_from_igraph does not work for an igraph object
#45
kozo2
closed
3 years ago
2
Update docs for version 0.0.8
#44
kozo2
closed
3 years ago
0
Reconcile igraph export with RCy3
#43
bdemchak
closed
3 years ago
1
Column names containing "/" fail on some calls
#42
bdemchak
opened
3 years ago
2
Issue with mapping node/edge names to SUIDs
#41
AlexanderPico
closed
3 years ago
4
Using basiCO to Run Reaction Kinetics Simulations on Py4cytoscape
#40
kyxhik
closed
2 years ago
7
Add subdomain param to CyNDEx functions
#39
AlexanderPico
closed
3 years ago
1
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