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czarrar / connectir

Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.
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Error in computing distances with text files for functional data #2

Closed czarrar closed 10 years ago

czarrar commented 10 years ago

Taken from another users issue:

Computing subject distances will run through 1 large blocks large block 1 ...creating temporary distance matrices ...compute distances

An error was detected: wrong sign in 'by' argument

Called by: seq.default(from, to, by = by)

Saving options...

Removing everything from memory ...sucesss

I've attached some of the files that created the error. Here is the command: /import/monstrum/Applications/R/bin/Rscript /import/monstrum/day2_fndm/progs/restbold/mdmr/connectir_subdist.R /import/monstrum/day2_fndm/group_level_analyses/restbold/mdmr/analyses/n83/n83_pearson --infuncs1=/import/monstrum/day2_fndm/group_level_analyses/restbold/mdmr/analyses/n83/input_files/n83_roi_list.txt --ztransform --method=pearson --memlimit=20 --bg=/import/monstrum/day2_fndm/group_level_analyses/restbold/mdmr/masks/MNI152_T1_4mm_brain.nii.gz

czarrar commented 10 years ago

this was resolved simply by updating the version and the user made sure they had permissions.