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czbiohub-sf / MIDAS

Metagenomic Intra-Species Diversity Analysis (MIDAS)
MIT License
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how to build ughh database? #102

Closed BaylorLyu closed 1 year ago

BaylorLyu commented 2 years ago

use command midas2 database can not download uhgg database on local. Can you write a workflow show how to build uhgg database？

zhaoc1 commented 2 years ago

Hi,

Please refer to https://midas2.readthedocs.io/en/latest/download_midasdb.html for downloading MIDASDB.

We don't build UHGG ourselves, and imported from the UHGG catalog: https://www.nature.com/articles/s41587-020-0603-3

If you are interested in building custom MIDASDB, please refer to this page: https://midas2.readthedocs.io/en/latest/advanced_topics.html#build-your-own-midasdb

Chunyu