Support for bioconda/singularity/nextflow

czbiohub-sf / MIDAS

Metagenomic Intra-Species Diversity Analysis (MIDAS)

MIT License

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Support for bioconda/singularity/nextflow #135

Closed uel3 closed 2 months ago

uel3 commented 5 months ago

Are there plans for a containerized version of MIDAS2 (singularity, bioconda)? Or plans for an nf-core module?

zhaoc1 commented 5 months ago

Hi,

We have conda for MIDAS2 (-c zhaoc1) and also Dockerfiles. I don't think we have plans for singularity, bioconda or nf-core module for MIDAS2. Thanks.

Chunyu