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czbiohub-sf / MIDAS

Metagenomic Intra-Species Diversity Analysis (MIDAS)
MIT License
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custom dabasebase build #140

Open nayeon1994 opened 3 weeks ago

nayeon1994 commented 3 weeks ago

I tried to build a custom database according to the manual.

However, I encountered an error with the following command:

midas2 build_midasdb --generate_cluster_info --species all --midasdb_name newdb --midasdb_dir tests_mags --debug --force -t 20

it said, midas2: error: unrecognized arguments: --generate_cluster_info

my version is Metagenomic Intra-Species Diversity Analysis System 2 (MIDAS2), Version 2.0.0.rc3

How can I solve this?

zhaoc1 commented 3 weeks ago

Hi,

I haven’t got time to update the readme for MIDAS v3 yet. Please refer to the tests/test_db.sh for building custom MIDAS db. Thanks.

Chunyu