Post-run QC summary report - Githubissues

czbiohub-sf / Rapid-QC-MS

Realtime quality control for mass spectrometry data acquisition

https://czbiohub-sf.github.io/Rapid-QC-MS

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Post-run QC summary report #10

Closed wasimsandhu closed 1 year ago

wasimsandhu commented 2 years ago

Button to view a summary report for each study, including details on:

Internal standards

Intensity dropout for X number of internal standards
In-run RT shift (of Y) in one direction for X number of samples
Mass accuracy shifting out of X range

Chromatography

Minimum (initial) pressure changing by X units
Maximum pressure changing by X units

Biological standards

Total number of targeted metabolites (found, missing)
X number of targeted metabolites showing a negative Y percent change
For each metabolite, if intensity change is outside of X standard deviations
User setting: treat missing values as “zero” or “missing”

wasimsandhu commented 2 years ago

Brian suggested sample-level report with samples categorized as pass, warning, fail.