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czbiohub-sf / iohub

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
https://czbiohub-sf.github.io/iohub/
BSD 3-Clause "New" or "Revised" License
29 stars 7 forks source link

Add TIFF examples #212

Open ziw-liu opened 7 months ago

ziw-liu commented 7 months ago 
          It would also be very helpful to include examples of the new slicing and string-indexing that xarray enables. Most/all of the official `iohub` examples currently focus on the zarr reader/writer.

Originally posted by @ieivanov in https://github.com/czbiohub-sf/iohub/pull/185#pullrequestreview-1894291116

ziw-liu commented 7 months ago

All of the example scripts are about NGFF or CC. That's because these are the formats we can write with iohub so test data doesn't need to be downloaded during documentation building. We can ask developers to always run pytest before building docs so the test data can be reused. But this will likely be a fragile hack.

https://github.com/czbiohub-sf/iohub/pull/185#issuecomment-1957988051