czbiohub-sf / nf-predictorthologs

*de novo* orthologous gene predictions from bam + bed or fasta/fastq data
MIT License
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diffhash updates #37

Closed olgabot closed 4 years ago

olgabot commented 4 years ago

Adds option for --diff_hash_with_abundance to account for abundances of hashes when doing differential hash expression. Also actually adds some documentation

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Learn more about contributing: CONTRIBUTING.md

olgabot commented 4 years ago

Punting writing docs to https://github.com/czbiohub/nf-predictorthologs/pull/35 where there's actually a usage section added

olgabot commented 4 years ago

sourmash search results are still empty, investigating

(base)
 Mon 27 Apr - 08:13  ~/code/nf-predictorthologs--olgabot/diffhash-v2   olgabot/diffhash-v2 ✔ 1☀ 
  head results/sourmash/search/*
==> results/sourmash/search/hash-1000205953012439013.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-1495932068113268597.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-15007113384290734478.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-1546493864503921709.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-1744843537079830884.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-2617310514365118384.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-3528776232794193794.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-4122771730240801637.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-691226190705356132.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-691738281129090084.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-741677291885817446.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-8035688914585273533.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-807635103818932299.csv <==
similarity,name,filename,md5

==> results/sourmash/search/hash-926359818839500271.csv <==
similarity,name,filename,md5