Closed olgabot closed 4 years ago
Punting writing docs to https://github.com/czbiohub/nf-predictorthologs/pull/35 where there's actually a usage
section added
sourmash search
results are still empty, investigating
(base)
Mon 27 Apr - 08:13 ~/code/nf-predictorthologs--olgabot/diffhash-v2 olgabot/diffhash-v2 ✔ 1☀
head results/sourmash/search/*
==> results/sourmash/search/hash-1000205953012439013.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-1495932068113268597.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-15007113384290734478.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-1546493864503921709.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-1744843537079830884.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-2617310514365118384.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-3528776232794193794.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-4122771730240801637.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-691226190705356132.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-691738281129090084.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-741677291885817446.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-8035688914585273533.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-807635103818932299.csv <==
similarity,name,filename,md5
==> results/sourmash/search/hash-926359818839500271.csv <==
similarity,name,filename,md5
Adds option for
--diff_hash_with_abundance
to account for abundances of hashes when doing differential hash expression. Also actually adds some documentationPR checklist
nextflow run . -profile test,docker
).nf-core lint .
).docs
is updated~CHANGELOG.md
is updatedLearn more about contributing: CONTRIBUTING.md