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czbiohub-sf / nf-predictorthologs

*de novo* orthologous gene predictions from bam + bed or fasta/fastq data
MIT License
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Don't require signatures to be separated by aligned/unaligned #40

Open olgabot opened 4 years ago

olgabot commented 4 years ago

After https://github.com/czbiohub/nf-predictorthologs/pull/36 is done, add the ability to extract aligned/unaligned hashes even when the signatures aren't separated by aligned/unaligned

olgabot commented 4 years ago

(e.g. for brawand2011 data https://github.com/czbiohub/kh-workflows/pull/15 where each species is aligned wholesale, we have a bam and fastq(s) for each sample, and will need to filter the bam for only aligned reads and filter the fastq(s) for unaligned reads)