czbiohub-sf / nf-predictorthologs

*de novo* orthologous gene predictions from bam + bed or fasta/fastq data
MIT License
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Add INFERNAL for noncoding RNAs, diamond makedb optimizations #54

Closed olgabot closed 4 years ago

olgabot commented 4 years ago

Maybe also add INFERNAL for noncoding RNA search? https://github.com/czbiohub/nf-predictorthologs/issues/22

PR checklist

olgabot commented 4 years ago

Added a test with --search_noncoding and it's taking FOREVER!! (been running for 58 minutes)

Mayybe, just maybe, searching ALL of Rfam is not the best idea. So I'm running the test on a local server to know what to filter Rfam down to.

olgabot commented 4 years ago

Merging because it was only test_download_refseq that ran out of time, and only on: push (on: pull_request worked fine for some reason)