Fix skip trimming and QC

[olgabot]

Uses @pranathivemuri's https://github.com/czbiohub/nf-predictorthologs/pull/78 changes as well

nf-core/predictorthologs pull request

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• [ ] This comment contains a description of changes (with reason)
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[pranathivemuri]

also, there are 80 checks on each predict-orthologs run. I am not sure if pushing one after another cancels other one.

two things to do here are

1. cancel the existing run if someone pushed
2. Decide if we need both pull request and push to run same tests twice, seems redundant

Look into kmermaid ci.yml file and probably fix that

[pranathivemuri]

I will wait for the tests to pass to approve