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czbiohub-sf / orpheum

Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
MIT License
18 stars 4 forks source link

More encodings + long reads #19

Closed olgabot closed 4 years ago

olgabot commented 4 years ago

Needed to set up https://github.com/czbiohub/nf-extractcoding/pull/1 properly

codecov-io commented 4 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (master@3e83772). Click here to learn what that means. The diff coverage is 44.44%.

Impacted file tree graph

@@           Coverage Diff            @@
##             master     #19   +/-   ##
========================================
  Coverage          ?   16.3%           
========================================
  Files             ?      20           
  Lines             ?    1233           
  Branches          ?       0           
========================================
  Hits              ?     201           
  Misses            ?    1032           
  Partials          ?       0
Impacted Files Coverage Δ
khtools/holoviews.py 0% <ø> (ø)
khtools/bloom_filter.py 7.82% <0%> (ø)
khtools/compare_kmer_content.py 22.42% <0%> (ø)
khtools/extract_coding.py 0% <0%> (ø)
khtools/sequence_encodings.py 74.13% <88.88%> (ø)

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