Provide pre-computed bloom filters for extracting protein coding

czbiohub-sf / orpheum

Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.

MIT License

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Open olgabot opened 4 years ago

olgabot commented 4 years ago

Context:

Computing a bloom filter for MERC database (34 GB of gzipped fasta files!!!) took many hours.. would be good to provide it precomputed with recommended k-mer sizes and alphabet encodings on Open science framework - osf.io

Thanks for the idea @bluegenes !