Add debugging and list based coding scores - Githubissues

czbiohub-sf / orpheum

Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.

MIT License

18 stars 4 forks source link

Add debugging and list based coding scores #88

Closed pranathivemuri closed 4 years ago

pranathivemuri commented 4 years ago

change pandas dataframe to list
fix tests
do black reformatting
do to csv, parquet file writers

Many thanks to contributing to czbiohub/sencha!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

[ ] This comment contains a description of changes (with reason)
[ ] If you've fixed a bug or added code that should be tested, add tests!
[ ] Ensure the test suite passes with pytest . (command to run: pytest or make coverage if you want to see which lines don't have tests yet)
[ ] Make sure your code is linted and autoformatted using black (black . --check).
[ ] Documentation in usage.md is updated
[ ] README.md is updated