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czbiohub-sf / rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
http://nf-co.re
MIT License
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Add CZ Biohub name and logo to pipeline #17

Closed olgabot closed 5 years ago

olgabot commented 5 years ago

Example run:

  nextflow run main.nf --genome GRCm38
N E X T F L O W  ~  version 19.03.0-edge
Launching `main.nf` [stupefied_marconi] - revision: d71c70a313
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                                                                                    (((((((((((((((
  ______  ________    .______    __    ______    __    __   __    __  .______      (((,.((((((   (((
 /      ||       /    |   _  \  |  |  /  __  \  |  |  |  | |  |  |  | |   _  \    ((             ((((
|  ,----'`---/  /     |  |_)  | |  | |  |  |  | |  |__|  | |  |  |  | |  |_)  |   (((    /(((. ((((((
|  |        /  /      |   _  <  |  | |  |  |  | |   __   | |  |  |  | |   _  <    (((((((((    ((((((
|  `----.  /  /----.  |  |_)  | |  | |  `--'  | |  |  |  | |  `--'  | |  |_)  |   (((((((       (((((
 \______| /________|  |______/  |__|  \______/  |__|  |__|  \______/  |______/     ((((((.     ,((((
                                                                                    (((((((* /(((((
 czbiohub/rnaseq : RNA-Seq Best Practice v1.2
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