Fix transcriptome-based quantification with Salmon

czbiohub-sf / rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

http://nf-co.re

MIT License

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Open olgabot opened 5 years ago

olgabot commented 5 years ago

The flags --run_tx_exp_quant and --run_txrevise currently just break because there's no transcriptome fasta stored with each genome