Use fastp for trimming instead of trimgalore

czbiohub-sf / rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

http://nf-co.re

MIT License

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Use fastp for trimming instead of trimgalore #3

Closed olgabot closed 5 years ago

olgabot commented 5 years ago

Fastp is a modern trimmer that trims all Poly-X sequences and adapters without having to tell it what the adapters are: https://github.com/OpenGene/fastp