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czbiohub-sf / rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
http://nf-co.re
MIT License
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Support 10x Genomics/droplet-based single-cell RNA-seq data #7

Open olgabot opened 5 years ago

olgabot commented 5 years ago

https://github.com/alexdobin/STAR/blob/master/RELEASEnotes.md

olgabot commented 5 years ago

Alevin may be a good option, too: https://www.biorxiv.org/content/biorxiv/early/2018/10/24/335000.full.pdf