czbiohub-sf / sc2-illumina-pipeline

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
GNU Affero General Public License v3.0
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Add annotation step with VADR #43

Closed jackkamm closed 3 years ago

jackkamm commented 4 years ago

It would be useful to add an annotation step that looks for frameshift events (as NCBI and GISAID do), this would allow us to catch potential issues earlier on in the process.