Add --save_filtered_reads option - Githubissues

czbiohub-sf / sc2-illumina-pipeline

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

GNU Affero General Public License v3.0

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Add --save_filtered_reads option #57

Closed olgabot closed 4 years ago

olgabot commented 4 years ago

Add the option to save host-filtered reads for future benchmarking

PR checklist

[ ] This comment contains a description of changes (with reason)
[x] If you've fixed a bug or added code that should be tested, add tests!
[ ] Ensure the test suite passes (nextflow run . -profile test,docker).
[ ] Make sure your code lints (nf-core lint .).
[ ] Documentation in docs is updated
[ ] CHANGELOG.md is updated
[ ] README.md is updated

jackkamm commented 4 years ago

Thanks!