Open jackkamm opened 4 years ago
Both of these tests currently result in 0 reads aligning to the reference genome.
For the case of test_fasta_reads, all aligning reads are removed by ivar trim for missing quality scores.
For test_single_end, it seems like the reads fail to align at the initial stages, I haven't figured out why yet.
Both of these tests are for use cases that we no longer use. So we may just want to remove this functionality altogether.
Both of these tests currently result in 0 reads aligning to the reference genome.
For the case of test_fasta_reads, all aligning reads are removed by ivar trim for missing quality scores.
For test_single_end, it seems like the reads fail to align at the initial stages, I haven't figured out why yet.
Both of these tests are for use cases that we no longer use. So we may just want to remove this functionality altogether.