Merging the PRs - Githubissues

czbiohub-sf / shrimPy

shrimPy: Smart High-throughput Robust Imaging & Measurement in Python

BSD 3-Clause "New" or "Revised" License

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Merging the PRs #112

Closed edyoshikun closed 3 months ago

edyoshikun commented 12 months ago

The mantis PRs should be merged in this order after testing:

Data processing:

[x] Bugfix #134 <--
[x] Registration #102
[x] Stabilization #128 <--
[ ] Segmentation #106
[x] Merging datasets #107

New features:

[ ] Stitching #137
[ ] Copy&Paste example #140
[x] Concatenate CLI #145
[x] PSF Benchmarking #131 <--
[ ] PSF Decon #130 <--
[ ] Illumination correction and denoising #109 <-- (move denoising to Viscy)

mattersoflight commented 5 months ago

The pytorch implementation of denoising models, this should be moved to VisCy: https://github.com/dl4mia/02_regression/blob/main/02_Noise2Void/n2v_solution.ipynb