czbiohub-sf / shrimPy

shrimPy: Smart High-throughput Robust Imaging & Measurement in Python
BSD 3-Clause "New" or "Revised" License
8 stars 1 forks source link

`estimate-bleaching` from zarr #52

Closed talonchandler closed 1 year ago

talonchandler commented 1 year ago

This PR generates bleaching curves from zarr stores (instead of the previous version that read NDTiff stores). I did this work to move towards #42, and to support Grace's analysis of bleaching experiments on hummingbird.

I'll iterate with Grace here, and I'll request a full review when we complete the analysis of this dataset.