We have this issue where some datasets don't have the proper CoordinateTransformation metadata, which has been increasingly useful for passing metadata between analysis steps in a pipeline in recOrder and mantis.
If we can have CLI call that takes in the input_path.zarr/*/*/* and the scale (T,C,Z,Y,X), we can use these values to update the existing store's metadata.
We have this issue where some datasets don't have the proper
CoordinateTransformationmetadata, which has been increasingly useful for passing metadata between analysis steps in a pipeline in recOrder and mantis.If we can have CLI call that takes in the
input_path.zarr/*/*/*and the scale (T,C,Z,Y,X), we can use these values to update the existing store's metadata.