This fixes #90 and #91. Here the pixel sizes and the voxel sizes are obtained from the ngff.position.scale(). These are passed through the image analysis pipelines with the appropriate pixel sizes in sample space.
The affine matrix is now generated by:
yx (rotation,translation,scaling) estimated from the selected points
z (translation) estimated from the selected points between channels
This fixes #90 and #91. Here the pixel sizes and the voxel sizes are obtained from the
ngff.position.scale(). These are passed through the image analysis pipelines with the appropriate pixel sizes in sample space. The affine matrix is now generated by: