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czbiohub-sf / tabula-muris-senis

Tabula Muris Senis
http://tabula-muris-senis.ds.czbiohub.org
BSD 3-Clause "New" or "Revised" License
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Missing genes in raw data #23

Closed DennisPost10 closed 3 years ago

DennisPost10 commented 3 years ago

Hi there, Are there unprocessed h5ad files available for droplet and facs containing all genes (especially mt-genes)? I am looking for something like the "tabula-muris-senis-droplet-official-raw-obj.h5ad" file but with all genes.

Thanks, Dennis

aopisco commented 3 years ago

Hi @DennisPost10,

there is such object for FACS (s3://czb-tabula-muris-senis/Data-to-reproduce-figures/mutation-analysis-objs/adata_genecode_counts_for_gatk_with_metadata_and_embeddings.h5ad) but not for droplet.

I hope this helps!