czbiohub-sf / tabula-muris-senis

Tabula Muris Senis
http://tabula-muris-senis.ds.czbiohub.org
BSD 3-Clause "New" or "Revised" License
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Raw fastq is unprocessed or re-extract from BAM? #37

Open zyh4482 opened 2 years ago

zyh4482 commented 2 years ago

I noticed the issue 223.

As @jamestwebber mentioned, the previous released raw fastq in AWS was extracted from BAM, which may exclude chimeric reads.

But this issue was post two years before. Downloading directory has changed. So I was wondering if this issue still exist.

What about the fastq files stored here? https://s3.console.aws.amazon.com/s3/buckets/czb-tabula-muris-senis?region=us-west-2&tab=objects

Are these files unprocessed or extracted from BAM?