For example, cell row 96552 in the tabula-muris-senis-facs-official-raw-obj.h5ad has 'cell' column 'L22.MAA000593.3_8_M.1.1'. The table reports 2099 n_genes and 189281 n_counts.
That appears to match s3://czb-tabula-muris-senis/Plate_seq/3_month/170907_A00111_0051_BH2HWLDMXX/results_gencode_ercc/L22-MAA000593-3_8_M-1-1.gencode.vM19.ERCC.Aligned.out.sorted.bam. However, this BAM only has 486 aligned read rows, so it can't reach those reported gene expression values.
Could you help me understand where I'm going wrong here? Thanks!
Hi, perhaps related to this issue in human https://github.com/czbiohub-sf/tabula-sapiens/issues/42, I have also found apparently mismatched BAMs in the mouse data.
For example, cell row 96552 in the tabula-muris-senis-facs-official-raw-obj.h5ad has 'cell' column 'L22.MAA000593.3_8_M.1.1'. The table reports 2099 n_genes and 189281 n_counts.
That appears to match s3://czb-tabula-muris-senis/Plate_seq/3_month/170907_A00111_0051_BH2HWLDMXX/results_gencode_ercc/L22-MAA000593-3_8_M-1-1.gencode.vM19.ERCC.Aligned.out.sorted.bam. However, this BAM only has 486 aligned read rows, so it can't reach those reported gene expression values.
Could you help me understand where I'm going wrong here? Thanks!