Questions about the droplet data of lung and Trachea in figshare

czbiohub-sf / tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

https://www.nature.com/articles/s41586-018-0590-4

BSD 3-Clause "New" or "Revised" License

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Questions about the droplet data of lung and Trachea in figshare #217

Closed liuqivandy closed 3 years ago

liuqivandy commented 5 years ago

Hello, I downloaded droplet data from figshare. The data of most tissues looks fine, but two of lung files (/Lung-10X_P8_12, /Lung-10X_P8_13) and the Trachea tissue (./Trachea-10X_P8_14, ./Trachea-10X_P8_15) has some problems. They included all the cells instead of filtered cells, so they all have 737280 cells there. Thanks! Qi

aopisco commented 5 years ago

@liuqivandy did you try using the data here: https://github.com/czbiohub/tabula-muris-vignettes/tree/master/data