raw data in GSE109774 lacking 10x libraries

czbiohub-sf / tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

https://www.nature.com/articles/s41586-018-0590-4

BSD 3-Clause "New" or "Revised" License

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raw data in GSE109774 lacking 10x libraries #244

Closed zyh4482 closed 2 years ago

zyh4482 commented 2 years ago

Do raw data stored in GSE109774 only contain the Smart-Seq2 data? ENA and GEOdataset provide download links for fastq. humancellatlas also provide raw fastq files. But all of them are Smart-Seq2 data. The cell number is 44950, as reported by the TabulaMuris 2018 article. But there should be another 55656 cells sequenced using 10x 3' libraries. Is there another way to find these 10x fastq? I found the link to AWS bucket for this dataset but I couldn't download it due to denied access.

aopisco commented 2 years ago

All data is available here https://s3.console.aws.amazon.com/s3/buckets/czb-tabula-muris-senis?region=us-west-2&tab=objects