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czbiohub-sf / tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
https://www.nature.com/articles/s41586-018-0590-4
BSD 3-Clause "New" or "Revised" License
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Cell annotation #251

Closed strawberry098 closed 1 year ago

strawberry098 commented 1 year ago

I downloaded the .robj file for spleen FACS droplet data. The metadata of the Seurat Object does not include a column of annotated cell types. How can I retrieve this information? - Thanks.

stanaka6 commented 1 year ago

I have the same situation when I download lung droplet data. On the other hand, I found a similar data set in Tabula Muris Senis (https://cellxgene.cziscience.com/collections/0b9d8a04-bb9d-44da-aa27-705bb65b54eb), which includes Seurat object and h5ad.

aopisco commented 1 year ago

@strawberry098 @stanaka6 thanks for your messages, to access the R compatible objects please download from here

aopisco commented 1 year ago

the objects in the link are for Tabula Muris Senis, and Tabula Muris is contained in Tabula Muris Senis (age="3m")