d-gebert
commented
1 year ago Hi Jung, sounds interesting!
For the extended bed file I’ve written a Perl script as a wrapper for proTRAC, which adds z-scores and other stuff. I’ll try to add the updated thing soon, but what I’ve already done right now is uploading the basic wrapper script with the proTRAC and pingpong scripts as well.
Hope that’s useful, but I’ll let you know once the updated wrapper is online.
All the best Daniel
On 19. May 2023, at 10:15, Jung19911124 @.***> wrote:
Hi, I have read your paper "Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation" and am very impressed. I would like to try to see if a similar trend can be observed using my unpublished data of some species of lepidoptera.
I have one question. Your *pics.bed file contains more information than the gtf file output by ProTRAC. Could you tell me how you obtained the data from columns 13 to 30, i.e. from "pp_zscore" to "RC"? Thanks in advance.
Sincerely, Jung
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Jung19911124
Hi, I have read your paper "Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation" and am very impressed. I would like to try to see if a similar trend can be observed using my unpublished data of some species of lepidoptera.
I have one question. Your *pics.bed file contains more information than the gtf file output by ProTRAC. Could you tell me how you obtained the data from columns 13 to 30, i.e. from "pp_zscore" to "RC"? Thanks in advance.
Sincerely, Jung