d-ming / AR-tools

A set of utility functions and Jupyter notebooks for attainable region (AR) computations.
2 stars 7 forks source link

Stoich subspace fixes #26

Closed d-ming closed 7 years ago

d-ming commented 7 years ago

The current stoichiometric subspace function is clunky and buggy. It needs to be streamlined -- broken up into smaller, more manageable sub-functions -- and tested properly.

At a minimum, it should be able to handle both 1-D and n-D reactions. It should also be able to compute the overall stoichiometric subspace for multiple feeds and a single reaction stoichiometry (for a single stoichiometric coefficient matrix)