(3/N) v13 release: Run consensus CNV modules for v13 release

[zzgeng]

Purpose/implementation Section

What scientific question is your analysis addressing?

run copy_number_consensus_call and copy_number_consensus_call_manta with v13 data

What was your approach?

run copy_number_consensus_call and copy_number_consensus_call_manta with v13 data

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

copy_number_consensus_call and copy_number_consensus_call_manta

Is there anything that you want to discuss further?

I run these two modules using their bash script. I will run the generate-analysis-files.sh throughly once all modules in this script have been tested.

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

• [ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• [ ] This analysis has been added to continuous integration.

Documentation Checklist

• [ ] This analysis module has a README and it is up to date.
• [ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• [ ] The analytical code is documented and contains comments.