d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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(3-B/N) GISTIC v13 #510

Closed jharenza closed 8 months ago

jharenza commented 8 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

This PR runs GISTIC v13 and also updates the analysis module script to point to run-gistic-module.sh which contains the R script previously in the analysis module script, and points to the run-gistic-opentargets.sh script.

What was your approach?

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

Documentation Checklist