What scientific question is your analysis addressing?
I am not sure if we had an issue with the OpenPBTA immune deconv package or why we changed the source along the way - but since quantiseq seems to not be working anymore, I am going to test out the most recent release.
What was your approach?
Add Oct 2023 release tag
What GitHub issue does your pull request address?
NA
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Is there anything that you want to discuss further?
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Results
What types of results are included (e.g., table, figure)?
What is your summary of the results?
Reproducibility Checklist
[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
[ ] This analysis has been added to continuous integration.
Documentation Checklist
[ ] This analysis module has a README and it is up to date.
[ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
[ ] The analytical code is documented and contains comments.
Purpose/implementation Section
What scientific question is your analysis addressing?
I am not sure if we had an issue with the OpenPBTA immune deconv package or why we changed the source along the way - but since quantiseq seems to not be working anymore, I am going to test out the most recent release.
What was your approach?
Add Oct 2023 release tag
What GitHub issue does your pull request address?
NA
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Is there anything that you want to discuss further?
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Results
What types of results are included (e.g., table, figure)?
What is your summary of the results?
Reproducibility Checklist
Documentation Checklist
README
and it is up to date.analyses/README.md
and the entry is up to date.