d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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update immune deconv package #541

Closed jharenza closed 7 months ago

jharenza commented 7 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

I am not sure if we had an issue with the OpenPBTA immune deconv package or why we changed the source along the way - but since quantiseq seems to not be working anymore, I am going to test out the most recent release.

What was your approach?

Add Oct 2023 release tag

What GitHub issue does your pull request address?

NA

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

Documentation Checklist

jharenza commented 7 months ago

I am going to close this for now. We can open a ticket for this for later.