[Optional] How long do you think this work will take?
an hour
[Optional] Who will complete this work?
@migbro
Ticket will be considered resolved either by a successful PR with updated release if applicable, or a simple denial of the request backed by a good reason
jharenza
commented
4 months ago
✨
[Required] Is this a new tool/workflow?
No
[Required] Which tools/workflows would you like to update/add?
Provide software links and
dockerPulllocation if applicableanalyses/collapse-rnaseq/cwl/scripts/liftover_collapse_rnaseq.py
[Required] What features (new params, inputs, outputs, etc) would you like to add to each?
Add reference files and test input locations if applicable
return happens too soon, causing all duplicate genes to be collapsed to be dropped, except one, in https://github.com/d3b-center/OpenPedCan-analysis/blob/a78b0e3fd711bcea2ed83fc0e950872a2065221b/analyses/collapse-rnaseq/cwl/scripts/liftover_collapse_rnaseq.py#L63-L71
[Optional] How long do you think this work will take?
an hour
[Optional] Who will complete this work?
@migbro
Ticket will be considered resolved either by a successful PR with updated release if applicable, or a simple denial of the request backed by a good reason