d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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Add missing samples to tmb calculation files #560

Closed jharenza closed 3 months ago

jharenza commented 4 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

The input BS id to BED file in the tmb module input folder was missing the new samples which were included in v14-15. This PR reruns the module to include those in the TMB calculation files.

What was your approach?

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

Documentation Checklist

jharenza commented 4 months ago

Note: tumor only beds are NA for now until we add the bed file to the repo

jharenza commented 4 months ago

@naqvia and @rjcorb could you review this at some point this week please?