move analysis module action - Githubissues

d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project

https://d3b-center.github.io/OpenPedCan-analysis/

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move analysis module action #571

Closed jharenza closed 4 months ago

jharenza commented 5 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

This PR moves the analysis module back into GHA now that the new docker image is built

What was your approach?

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
[ ] This analysis has been added to continuous integration.

Documentation Checklist

[ ] This analysis module has a README and it is up to date.
[ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
[ ] The analytical code is documented and contains comments.

jharenza commented 4 months ago

@devbyaccident and @rjcorb - this should pass fully now. @rjcorb can you review the MB, GSVA, etc module updates and @devbyaccident can you review the action updates? :)